I installed 1.5" BORA spacers last night and noticed the same thing. That said, the area of the fender that had the rubbing issue is on the inside and it is an extremely soft and flexible plastic, so I was able to use tin snips to very easily cut away a segment that is less than 2 inches wide and about three inches tall. I used some sandpaper to smooth everything out and nobody would ever be able to tell that anything was ever done. Probably took less than 15 minutes to do both sides. In addition, I added some double sided tape behind the fender in this area to hold it tight so it doesn't stick out. The plastic is so soft and flexible that mine was buckling out a little on the driver's side, so the tape holds everything tight.
As for the wheel spacers, you wouldn't think moving the stock wheels out 1.5" would have a big impact on looks, but it really does. It is amazing to me how such a small change can really change the stance and looks of the truck. Something else that I found interesting was how the ride softened. Apparantly moving the wheels out 1.5" changes the geometry enough for the ride to be noticeably softer feeling. I wish the clearances were a little bigger in the front, but I couldn't be happier with the new look and ride.